recipe dropletutils-scripts

A set of wrappers for operations associated with Aaron Lun’s DropletUtils package. Functions in R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.

Homepage

https://github.com/ebi-gene-expression-group/dropletutils-scripts

License

GPL / GPL-3

Recipe

/dropletutils-scripts/meta.yaml

package dropletutils-scripts

(downloads) docker_dropletutils-scripts

Versions

0.0.2-1, 0.0.1-1, 0.0.1-0

Depends bioconductor-biobase

Depends bioconductor-dropletutils

>=1.0.3,<1.3

Depends bioconductor-singlecellexperiment

Depends r-base

3.5.1.*

Depends r-optparse

Depends r-workflowscriptscommon

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dropletutils-scripts

and update with:

conda update dropletutils-scripts

or use the docker container:

docker pull quay.io/biocontainers/dropletutils-scripts:<tag>

(see dropletutils-scripts/tags for valid values for <tag>)