recipe drprg

Drug resistance prediction with reference graphs

Homepage:

https://github.com/mbhall88/drprg

License:

MIT

Recipe:

/drprg/meta.yaml

package drprg

(downloads) docker_drprg

versions:

0.1.1-10.1.1-0

depends bcftools:

depends libgcc-ng:

>=12

depends mafft:

7.505.*

depends make_prg:

0.4.*

depends openssl:

>=3.1.0,<4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install drprg

and update with::

   mamba update drprg

To create a new environment, run:

mamba create --name myenvname drprg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/drprg:<tag>

(see `drprg/tags`_ for valid values for ``<tag>``)

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