recipe duphold

SV callers like lumpy look at split-reads and pair distances to find structural variants. This tool is a fast way to add depth information to those calls.

Homepage:

https://github.com/brentp/duphold

License:

MIT

Recipe:

/duphold/meta.yaml

package duphold

Versions:

0.2.1-3,  0.2.1-2,  0.2.1-1,  0.2.1-0,  0.2.0-0,  0.1.4-0,  0.1.3-0,  0.1.2-0,  0.1.1-0, 

0.2.1-3,  0.2.1-2,  0.2.1-1,  0.2.1-0,  0.2.0-0,  0.1.4-0,  0.1.3-0,  0.1.2-0,  0.1.1-0,  0.1.0-0,  0.0.9-0,  0.0.6-0,  0.0.3-0,  0.0.2-0

Depends:

• htslib >=1.9,<1.10.0a0

• libgcc-ng >=10.3.0

Required By:

• smoove

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install duphold

and update with:

conda update duphold

or use the docker container:

docker pull quay.io/biocontainers/duphold:<tag>

(see duphold/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/duphold/README.html)