recipe ectyper

ECtyper is a python program for serotyping E. coli genomes

Homepage:

https://github.com/phac-nml/ecoli_serotyping

License:

Apache 2

Recipe:

/ectyper/meta.yaml

package ectyper

Versions:

1.0.0-1,  1.0.0-0,  0.9.1-0,  0.9.0-0,  0.8.1-0,  0.5.4-2,  0.1-2,  0.1-0

Depends:

• bcftools >=1.8.*

• biopython >=1.70.*

• blast >=2.7.1.*

• bowtie2 >=2.3.*

• mash >=2.0.*

• pandas >=0.23.1.*

• pytest >=3.5

• python >=3.5

• requests >=2.*.*

• samtools >=1.8.*

• seqtk >=1.2.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ectyper

and update with:

conda update ectyper

or use the docker container:

docker pull quay.io/biocontainers/ectyper:<tag>

(see ectyper/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ectyper/README.html)