recipe efishent

A tool to design RNA FISH oligos/probes

Homepage:

https://github.com/bbquercus/eFISHent/

License:

MIT / MIT

Recipe:

/efishent/meta.yaml

package efishent

Versions:

0.0.4-0,  0.0.3-0,  0.0.2-0,  0.0.1-0

Depends:

• biopython

• blast

• bowtie

• entrez-direct

• gtfparse

• jellyfish

• luigi

• matplotlib-base

• numpy

• pandas

• pyarrow

• pyomo

• pysam

• python >=3.9

• rnastructure

• samtools

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install efishent

and update with:

conda update efishent

or use the docker container:

docker pull quay.io/biocontainers/efishent:<tag>

(see efishent/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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