recipe emu

Emu is a relative abundance estimator for 16s genomic data.

Homepage:

https://gitlab.com/treangenlab/emu

License:

MIT

Recipe:

/emu/meta.yaml

package emu

Versions:

3.4.4-1,  3.4.4-0,  3.4.3-0,  3.4.2-0,  3.4.1-0,  3.4.0-0,  3.3.1-1,  3.3.1-0,  3.3.0-0, 

3.4.4-1,  3.4.4-0,  3.4.3-0,  3.4.2-0,  3.4.1-0,  3.4.0-0,  3.3.1-1,  3.3.1-0,  3.3.0-0,  3.2.0-0,  3.1.0-0,  3.0.0-0,  2.0.1-2,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.0.3-0,  1.0.2-0,  1.0.1-1,  1.0.1-0,  1.0.0-1,  1.0.0-0

Depends:

• bioawk

• biopython

• flatten-dict

• importlib-metadata

• minimap2 >=2.22

• numpy >=1.11

• pandas >=1.1.3

• pysam >=0.15

• python >=3.6

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install emu

and update with:

conda update emu

or use the docker container:

docker pull quay.io/biocontainers/emu:<tag>

(see emu/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/emu/README.html)