recipe enrichm

EnrichM is a toolbox for comparing the functional composition of population genomes

Homepage

https://github.com/geronimp/enrichM

License

GPL3 / GPL3+

Recipe

/enrichm/meta.yaml

package enrichm

Versions

0.5.0-0

Depends

• biopython >=1.66

• diamond 0.9.22

• hmmer >=3.1b

• mcl >=14.137

• mmseqs2 >=2.23394

• moreutils

• numpy >=1.9.1

• openmp

• pandas >=0.17.1

• parallel >=20180222

• prodigal >=2.6.3

• python >=3.6

• python-dateutil >=2.5.1

• r-base

• r-gridextra

• r-optparse

• scikit-learn

• scipy >=0.17.0

• seqmagick

• six >=1.10.0

• statsmodels >=0.8.0rc1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install enrichm

and update with:

conda update enrichm

or use the docker container:

docker pull quay.io/biocontainers/enrichm:<tag>

(see enrichm/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/enrichm/README.html)