recipe enrichm

EnrichM is a toolbox for comparing the functional composition of population genomes

Homepage:

https://github.com/geronimp/enrichM

License:

GPL3 / GPL3+

Recipe:

/enrichm/meta.yaml

package enrichm

(downloads) docker_enrichm

versions:

0.6.5-00.6.4-00.6.3-00.6.2-00.5.0-0

depends biopython:

>=1.66

depends diamond:

0.9.22

depends hmmer:

>=3.1b

depends mcl:

>=14.137

depends mmseqs2:

>=2.23394

depends moreutils:

depends numpy:

>=1.9.1

depends openmp:

depends pandas:

>=0.17.1

depends parallel:

>=20180222

depends prodigal:

>=2.6.3

depends python:

>=3.6

depends python-dateutil:

>=2.5.1

depends r-base:

depends r-gridextra:

depends r-optparse:

depends scikit-learn:

depends scipy:

>=0.17.0

depends seqmagick:

depends six:

>=1.10.0

depends statsmodels:

>=0.8.0rc1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install enrichm

and update with::

   mamba update enrichm

To create a new environment, run:

mamba create --name myenvname enrichm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/enrichm:<tag>

(see `enrichm/tags`_ for valid values for ``<tag>``)

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