recipe ensembl-genomio

Ensembl GenomIO - tools to convert basic genomic data into Ensembl cores and back to flatfile

Homepage:

https://www.ensembl.org/

Documentation:

https://ensembl.github.io/ensembl-genomio/

Developer docs:

https://github.com/Ensembl/ensembl-genomio

License:

APACHE / Apache-2.0

Recipe:

/ensembl-genomio/meta.yaml

Links:

biotools: Ensembl

package ensembl-genomio

versions:

1.6.1-0

depends bcbio-gff:

0.7.1

depends biopython:

>=1.81

depends ensembl-py:

>=2.1.2

depends ensembl-utils:

>=0.5.1

depends intervaltree:

>=3.1.0

depends jsonschema:

>=4.6.0

depends mysql-connector-python:

>=8.0.29

depends python:

>=3.10

depends python-redmine:

>=2.3.0

depends requests:

>=2.28.0

depends spython:

>=0.3.13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ensembl-genomio

and update with::

   mamba update ensembl-genomio

To create a new environment, run:

mamba create --name myenvname ensembl-genomio

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ensembl-genomio:<tag>

(see `ensembl-genomio/tags`_ for valid values for ``<tag>``)

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