recipe etoki

EToKi (Enterobase Tool Kit) includes methods related to Enterobase data analysis pipelines

Homepage:

https://github.com/zheminzhou/EToKi

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/etoki/meta.yaml

package etoki

Versions:

1.2.3-0

Depends:

• bbmap

• blast

• bowtie2

• bwa

• click

• curl

• diamond

• ete3

• fasttree

• flye

• gatk

• kraken2

• last

• megahit

• mmseqs2

• nextpolish

• numba

• numpy 1.21.6.*

• pandas

• perl-lyve-set

• piler-cr

• pilon

• psutil

• python >=3.6

• rapidnj

• raxml

• raxml-ng

• samtools

• scikit-learn

• scipy

• simbac

• spades >=3.15

• trf

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install etoki

and update with:

conda update etoki

or use the docker container:

docker pull quay.io/biocontainers/etoki:<tag>

(see etoki/tags for valid values for <tag>)

Download stats

Link to this page

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