recipe evehap

Universal mtDNA haplogroup classifier for ancient and modern DNA

Homepage:

https://github.com/trianglegrrl/eveHap

License:

PolyForm-Noncommercial-1.0.0

Recipe:

/evehap/meta.yaml

eveHap is a universal mtDNA (mitochondrial DNA) haplogroup classifier. It classifies ancient and modern DNA samples against phylogenetic haplogroup references, supporting multiple input formats (BAM, VCF, FASTA, HSD, microarray) and providing both high-coverage (Kulczynski scoring) and low-coverage (tree traversal) classification methods.

package evehap

(downloads) docker_evehap

versions:

0.1.1-0

depends biopython:

>=1.80

depends click:

>=8.0

depends pysam:

>=0.21.0

depends python:

>=3.8

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install evehap

and update with::

   mamba update evehap

To create a new environment, run:

mamba create --name myenvname evehap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/evehap:<tag>

(see `evehap/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/evehap/README.html)