recipe eviann

Evidence-based eukaryotic genome annotation software.

Homepage:

https://github.com/alekseyzimin/EviAnn_release

Documentation:

https://github.com/alekseyzimin/EviAnn_release/blob/v2.0.3/README.md

License:

GPL3 / GPL-3.0-or-later

Recipe:

/eviann/meta.yaml

Links:

doi: 10.1101/2025.05.07.652745v1

package eviann

versions:

2.0.3-1,  2.0.3-0

depends blast:

depends bzip2:

>=1.0.8,<2.0a0

depends hisat2:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends minimap2:

depends miniprot:

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends samtools:

depends stringtie:

depends wget:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install eviann

and update with::

   mamba update eviann

To create a new environment, run:

mamba create --name myenvname eviann

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/eviann:<tag>

(see `eviann/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/eviann/README.html)