- recipe expansionhunter
A tool for estimating repeat sizes
- Homepage:
- License:
APACHE
- Recipe:
- package expansionhunter¶
- versions:
5.0.0-1,5.0.0-0,4.0.2-0,4.0.1-0,3.2.2-1,3.2.2-0,3.2.0-0,3.1.2-0,3.0.1-0,5.0.0-1,5.0.0-0,4.0.2-0,4.0.1-0,3.2.2-1,3.2.2-0,3.2.0-0,3.1.2-0,3.0.1-0,3.0.0-0,2.0.8-1,2.0.8-0,2.0.6-0- depends abseil-cpp:
>=20210324.2,<20210324.3.0a0- depends boost:
>=1.83,<1.84.0a0- depends bzip2:
>=1.0.8,<2.0a0- depends fmt:
>=9.1.0,<10.0a0- depends gtest:
>=1.14.0,<1.14.1.0a0- depends htslib:
>=1.18,<1.21.0a0- depends libcurl:
>=8.4.0,<9.0a0- depends libdeflate:
>=1.18,<1.19.0a0- depends libgcc-ng:
>=12- depends libstdcxx-ng:
>=12- depends libzlib:
>=1.2.13,<1.3.0a0- depends spdlog:
>=1.12.0,<1.13.0a0- depends xz:
>=5.2.6,<6.0a0- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install expansionhunter and update with:: mamba update expansionhunter
To create a new environment, run:
mamba create --name myenvname expansionhunter
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/expansionhunter:<tag> (see `expansionhunter/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/expansionhunter/README.html)
