export2graphlan

downloads

export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn. It automatically generate the input tree and the annotation file for GraPhlAn, starting from the input/output of MetaPhlAn, LEfSe, and HUMAnN. It supports also the biom file format. The annotation file will highlight specific sub-trees/clades automatically inferred from input file(s) provided. The two output file of export2graphlan should then be used with GraPhlAn.

Home https://bitbucket.org/CibioCM/export2graphlan/overview
Versions 0.19, 0.20
License MIT License
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/export2graphlan

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install export2graphlan

and update with:

conda update export2graphlan

docker

A Docker container is available at https://quay.io/repository/biocontainers/export2graphlan.