recipe extract-sv-reads

Tool for extracting splitter or discordant reads from a BAM or CRAM file.

Homepage

https://github.com/hall-lab/extract_sv_reads

License

MIT

Recipe

/extract-sv-reads/meta.yaml

package extract-sv-reads

Versions

1.3.0-0,  1.2.1-1,  1.2.1-0,  1.1.2-0,  1.1.0-0

Depends

• bzip2 >=1.0.6,<2.0a0

• curl >=7.59.0,<8.0a0

• libstdcxx-ng >=4.9

• xz >=5.2.4,<5.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install extract-sv-reads

and update with:

conda update extract-sv-reads

or use the docker container:

docker pull quay.io/biocontainers/extract-sv-reads:<tag>

(see extract-sv-reads/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/extract-sv-reads/README.html)