extract-sv-reads

downloads

Tool for extracting splitter or discordant reads from a BAM or CRAM file.

Home https://github.com/hall-lab/extract_sv_reads
Versions 1.1.0
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/extract-sv-reads

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install extract-sv-reads

and update with:

conda update extract-sv-reads

docker

A Docker container is available at https://quay.io/repository/biocontainers/extract-sv-reads.