recipe extract-sv-reads

Tool for extracting splitter or discordant reads from a BAM or CRAM file.

Homepage:

https://github.com/hall-lab/extract_sv_reads

License:

MIT

Recipe:

/extract-sv-reads/meta.yaml

package extract-sv-reads

Versions:

1.3.0-3,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.1.2-0,  1.1.0-0

Depends:

• boost-cpp >=1.74.0,<1.74.1.0a0

• htslib >=1.9,<1.10.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• perl >=5.32.1,<5.33.0a0 *_perl5

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install extract-sv-reads

and update with:

conda update extract-sv-reads

or use the docker container:

docker pull quay.io/biocontainers/extract-sv-reads:<tag>

(see extract-sv-reads/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/extract-sv-reads/README.html)