recipe fargene

Fragmented Antibiotic Resistance Gene iENntifiEr takes either fragmented metagenomic data or longer sequences as input and predicts and delivers full-length antiobiotic resistance genes as output

Homepage:

https://github.com/fannyhb/fargene

License:

MIT

Recipe:

/fargene/meta.yaml

package fargene

Versions:

0.1-4,  0.1-3,  0.1-2,  0.1-0

Depends:

• biopython >=1.68

• clustalo

• emboss

• hmmer

• matplotlib

• numpy

• pip

• prodigal

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• pyyaml

• seqtk

• spades

• trim-galore

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fargene

and update with:

conda update fargene

or use the docker container:

docker pull quay.io/biocontainers/fargene:<tag>

(see fargene/tags for valid values for <tag>)

Download stats

Link to this page

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