recipe fast2q

A Python3 program that counts sequence occurrences in FASTQ files.

Homepage:

https://github.com/afombravo/2FAST2Q

License:

GPL-3.0

Recipe:

/fast2q/meta.yaml

package fast2q

versions:

2.7.2-0

depends colorama:

depends dataclasses:

depends matplotlib-base:

depends numba:

depends numpy:

depends psutil:

depends python:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fast2q

and update with::

   mamba update fast2q

To create a new environment, run:

mamba create --name myenvname fast2q

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fast2q:<tag>

(see `fast2q/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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