recipe fastq-screen

FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect

Homepage

http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/

License

GPLv3

Recipe

/fastq-screen/meta.yaml

package fastq-screen

Versions

0.13.0-0, 0.11.3-1, 0.11.3-0, 0.11.1-1, 0.11.1-0, 0.5.2-1, 0.5.2-0

Depends

• bowtie

• bowtie2

• perl >=5.26.2,<5.26.3.0a0

• perl-gdgraph

Required By

• sequana

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fastq-screen

and update with:

conda update fastq-screen

or use the docker container:

docker pull quay.io/biocontainers/fastq-screen:<tag>

(see fastq-screen/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fastq-screen/README.html)