recipe fastq-screen

FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect

Homepage:

http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/

License:

GPLv3

Recipe:

/fastq-screen/meta.yaml

package fastq-screen

Versions:

0.15.2-0,  0.14.0-2,  0.14.0-1,  0.14.0-0,  0.13.0-1,  0.13.0-0,  0.11.3-1,  0.11.3-0,  0.11.1-1, 

0.15.2-0,  0.14.0-2,  0.14.0-1,  0.14.0-0,  0.13.0-1,  0.13.0-0,  0.11.3-1,  0.11.3-0,  0.11.1-1,  0.11.1-0,  0.5.2-1,  0.5.2-0

Depends:

• bowtie

• bowtie2

• perl >=5.32.1,<6.0a0 *_perl5

• perl-gdgraph

Required By:

• massiveqc

• trnanalysis

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fastq-screen

and update with:

conda update fastq-screen

or use the docker container:

docker pull quay.io/biocontainers/fastq-screen:<tag>

(see fastq-screen/tags for valid values for <tag>)

Download stats

Link to this page

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