- recipe fastqc-rs
A fast quality control tool for FASTQ files written in rust.
- package fastqc-rs¶
- depends bzip2:
- depends freetype:
- depends libexpat:
- depends libgcc-ng:
- depends libstdcxx-ng:
- depends libzlib:
- depends openssl:
- depends xz:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install fastqc-rs and update with:: mamba update fastqc-rs
To create a new environment, run:
mamba create --name myenvname fastqc-rs
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/fastqc-rs:<tag> (see `fastqc-rs/tags`_ for valid values for ``<tag>``)