recipe fastqc

A quality control tool for high throughput sequence data.

Homepage

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

License

GPL >=3

Recipe

/fastqc/meta.yaml

Links

biotools: fastqc

package fastqc

(downloads) docker_fastqc

Versions

0.11.8-1, 0.11.8-0, 0.11.7-5, 0.11.7-4, 0.11.7-2, 0.11.7-0, 0.11.6-2, 0.11.6-1, 0.11.6-0, 0.11.5-3, 0.11.5-2, 0.11.5-1, 0.11.4-2, 0.11.4-1, 0.11.4-0, 0.11.3-1, 0.11.3-0, 0.11.2-1, 0.11.2-0, 0.10.1-1, 0.10.1-0

Depends font-ttf-dejavu-sans-mono

Depends fontconfig

Depends openjdk

>=8.0.144

Depends perl

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fastqc

and update with:

conda update fastqc

or use the docker container:

docker pull quay.io/biocontainers/fastqc:<tag>

(see fastqc/tags for valid values for <tag>)