recipe fastspar

Rapid and scalable correlation estimation for compositional data

Homepage

https://github.com/scwatts/fastspar

License

GPLv3

Recipe

/fastspar/meta.yaml

Links

doi: 10.1093/bioinformatics/bty734, doi: 10.1371/journal.pcbi.1002687

FastSpar is a C++ implementation of the SparCC algorithm which is up to several thousand times faster than the original Python2 release and uses much less memory. The FastSpar implementation provides threading support and a p-value estimator which accounts for the possibility of repetitious data permutations.

package fastspar

(downloads) docker_fastspar

Versions

0.0.10-00.0.9-00.0.6-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fastspar

and update with:

conda update fastspar

or use the docker container:

docker pull quay.io/biocontainers/fastspar:<tag>

(see fastspar/tags for valid values for <tag>)