- recipe fastx_toolkit
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information).
The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others
However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results.
The FASTX-Toolkit tools perform some of these preprocessing tasks.'
- Homepage:
- License:
AGPL
- Recipe:
- package fastx_toolkit¶
-
- Versions:
0.0.14-11
,0.0.14-10
,0.0.14-9
,0.0.14-8
,0.0.14-7
,0.0.14-6
,0.0.14-5
,0.0.14-4
,0.0.14-3
,0.0.14-11
,0.0.14-10
,0.0.14-9
,0.0.14-8
,0.0.14-7
,0.0.14-6
,0.0.14-5
,0.0.14-4
,0.0.14-3
,0.0.14-2
,0.0.14-1
,0.0.14-0
- Depends:
gnuplot
>=5.0.5
libgcc-ng
>=12
libgtextutils
>=0.7,<0.8.0a0
libstdcxx-ng
>=12
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install fastx_toolkit
and update with:
conda update fastx_toolkit
or use the docker container:
docker pull quay.io/biocontainers/fastx_toolkit:<tag>
(see fastx_toolkit/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/fastx_toolkit/README.html)