recipe fermi2

Fermi2 focuses on the exploration of FMD-index as a graph.

Homepage:

https://github.com/lh3/fermi2

License:

Unknown

Recipe:

/fermi2/meta.yaml

package fermi2

(downloads) docker_fermi2

versions:
r193-7,  r193-6,  r193-5,  r193-4,  r193-3,  r193-2,  r193-1,  r193-0,  r188-0, 

r193-7,  r193-6,  r193-5,  r193-4,  r193-3,  r193-2,  r193-1,  r193-0,  r188-0,  r170-3,  r170-2,  r170-1,  r170-0

depends bfc:

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends make:

depends perl:

depends ropebwt2:

depends seqtk:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fermi2

and update with::

   mamba update fermi2

To create a new environment, run:

mamba create --name myenvname fermi2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fermi2:<tag>

(see `fermi2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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