recipe fermikit

FermiKit is a de novo assembly based variant calling pipeline for deep Illumina resequencing data.

Homepage:

https://github.com/lh3/fermikit

License:

Unknown

Recipe:

/fermikit/meta.yaml

package fermikit

Versions:

0.14.dev1-1,  0.14.dev1-0

Depends:

• bfc ==r181

• bwa ==0.7.15

• fermi2 ==r193

• htsbox ==r327

• perl 5.22.0*

• ropebwt2 ==r187

• seqtk ==r82

• trimadap ==r10

• zlib 1.2.11*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fermikit

and update with:

conda update fermikit

or use the docker container:

docker pull quay.io/biocontainers/fermikit:<tag>

(see fermikit/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fermikit/README.html)