recipe figtree

FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures.

Homepage

https://github.com/rambaut/figtree

License

GPL / GPLv2

Recipe

/figtree/meta.yaml

package figtree

(downloads) docker_figtree

Versions

1.4.4-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install figtree

and update with:

conda update figtree

or use the docker container:

docker pull quay.io/biocontainers/figtree:<tag>

(see figtree/tags for valid values for <tag>)

Notes

FigTree is Java program that comes with a custom wrapper shell script. This shell wrapper is called "figtree" and is on $PATH by default. By default "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "figtree -Xms512m -Xmx1g"