recipe fiji-max_inscribed_circles

ImageJ / Fiji plugin implementing an iterative Largest Inscribed Circle algorithm using a euclidean distance map

Homepage:

https://imagej.net/plugins/max-inscribed-circles

Developer docs:

https://github.com/BIOP/ijp-max-inscribed-circles

License:

GPLv3

Recipe:

/fiji-max_inscribed_circles/meta.yaml

ImageJ / Fiji plugin implementing an iterative Largest Inscribed Circle algorithm which runs over a binary image or selection in order to fit the maximum number of non-touching circles down to a minimum diameter. The approach uses a Euclidean Distance Map in order to find candidate circles from the largest to the smallest. The code is written for Java 8, which is the currently supported Java version for Fiji and ImageJ.

package fiji-max_inscribed_circles

(downloads) docker_fiji-max_inscribed_circles

versions:

2.1.0-0,  2.0.0-0,  1.1.2-0

depends fiji:

>=20220414

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fiji-max_inscribed_circles

and update with::

   mamba update fiji-max_inscribed_circles

To create a new environment, run:

mamba create --name myenvname fiji-max_inscribed_circles

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fiji-max_inscribed_circles:<tag>

(see `fiji-max_inscribed_circles/tags`_ for valid values for ``<tag>``)

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