recipe fishplotpy

A Python implementation for visualizing clonal evolution dynamics using fish plots

Homepage:

https://github.com/Sayitobar/fishplotpy

License:

Apache / Apache-2.0

Recipe:

/fishplotpy/meta.yaml

fishplotpy is a Python translation of the R package fishplot by Chris Miller et al. It provides functionality for calculating plot layout for clonal evolution and supports multiple plot shapes (polygon, spline, bezier) with customizable appearance and annotations. Designed for cancer genomics and evolutionary biology applications.

package fishplotpy

(downloads) docker_fishplotpy

versions:

1.0.0-0

depends matplotlib-base:

depends numpy:

depends pandas:

depends python:

>=3.9

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fishplotpy

and update with::

   mamba update fishplotpy

To create a new environment, run:

mamba create --name myenvname fishplotpy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fishplotpy:<tag>

(see `fishplotpy/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fishplotpy/README.html)