recipe flexiplex

flexiplex: the flexible demultiplexer (filter barcodes by whitelist and inflection point)

Homepage:

https://github.com/DavidsonGroup/flexiplex

Documentation:

https://davidsongroup.github.io/flexiplex

License:

MIT / MIT

Recipe:

/flexiplex/meta.yaml

Links:

doi: 10.1101/2023.08.21.554084

Flexiplex is a fast and versatile sequence searching and demultiplexing tool for omics data. For more information, see the accompanying bioRxiv preprint "Davidson et al. Flexiplex: A versatile demultiplexer and search tool for omics data."

package flexiplex

(downloads) docker_flexiplex

versions:

1.02.5-0,  1.02.4-0,  1.02.3-0,  1.01-2,  1.01-1,  1.01-0,  0.97.1-1,  0.97.1-0,  0.97-0

depends cachetools:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends matplotlib-base:

depends numpy:

depends pandas:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends requests:

requirements:

additional platforms:
osx-arm64,  linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install flexiplex

and update with::

   mamba update flexiplex

To create a new environment, run:

mamba create --name myenvname flexiplex

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/flexiplex:<tag>

(see `flexiplex/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/flexiplex/README.html)