recipe flippyr

This package is designed to align a PLINK fileset with a FASTA reference genome.

Homepage

https://github.com/BEFH/flippyr

License

MIT / MIT

Recipe

/flippyr/meta.yaml

Flippy is a simple, fast script to ensure that PLINK filesets are aligned to a reference genome in FASTA format. It identifies and fixes strand flipping, and reversed alleles. It removes ambiguous (palindromic) alleles and sites that do not match the reference genome. It also recognizes and removes multi- allelic sites and indels by default. Instructions and more details can be found on GitHub.

package flippyr

(downloads) docker_flippyr

Versions

0.5.3-0,  0.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install flippyr

and update with:

conda update flippyr

or use the docker container:

docker pull quay.io/biocontainers/flippyr:<tag>

(see flippyr/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/flippyr/README.html)