recipe freyja

Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples and provides functionality to analyze lineage dynamics.

Homepage:

https://github.com/andersen-lab/Freyja

License:

BSD

Recipe:

/freyja/meta.yaml

package freyja

Versions:

1.3.11-0,  1.3.10-0,  1.3.9-0,  1.3.8-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0, 

1.3.11-0,  1.3.10-0,  1.3.9-0,  1.3.8-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3-1,  1.3-0,  1.2.1-0,  1.2-0,  1.1-0

Depends:

• click

• cvxpy

• ivar

• joblib

• matplotlib-base

• numpy

• pandas

• plotly

• python >=3.7

• pyyaml

• requests

• samtools

• tqdm

• usher

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install freyja

and update with:

conda update freyja

or use the docker container:

docker pull quay.io/biocontainers/freyja:<tag>

(see freyja/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/freyja/README.html)