- recipe funannotate
funannotate: eukaryotic genome annotation pipeline
- Homepage:
- Documentation:
funannotate.readthedocs.io
- License:
BSD / BSD-2-Clause
- Recipe:
- package funannotate¶
-
- Versions:
1.8.15-2
,1.8.15-1
,1.8.15-0
,1.8.13-0
,1.8.11-0
,1.8.9-3
,1.8.9-2
,1.8.9-1
,1.8.9-0
,1.8.15-2
,1.8.15-1
,1.8.15-0
,1.8.13-0
,1.8.11-0
,1.8.9-3
,1.8.9-2
,1.8.9-1
,1.8.9-0
,1.8.7-0
,1.8.5-1
,1.8.5-0
,1.8.3-0
,1.8.1-1
,1.8.1-0
,1.7.4-1
,1.7.4-0
,1.7.3-0
,1.7.2-0
,1.7.1-1
- Depends:
augustus
3.5.0
diamond
>=2.1.6
evidencemodeler
1.1.1
kallisto
>=0.46.0,<0.46.2
mafft
>=7
matplotlib-base
<3.5
pandas
<2.0
pasa
>=2.4.1
perl-db-file
proteinortho
>=6.0.16
python
>=3.6,<3.9
r-base
>=3.4.1
salmon
>=0.9
samtools
>=1.9
trinity
>=2.8.5 h8b12597_5
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install funannotate
and update with:
conda update funannotate
or use the docker container:
docker pull quay.io/biocontainers/funannotate:<tag>
(see funannotate/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/funannotate/README.html)