recipe fusion-filter

FusionFilter provides a common fusion-finding, filtering, and annotation framework for the Trinity Cancer Transcriptome Analysis Toolkit (CTAT).

Homepage

https://github.com/FusionFilter/FusionFilter

License

BSD-3-Clause

Recipe

/fusion-filter/meta.yaml

FusionFilter provides a common fusion-finding, filtering, and annotation framework used by the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). This system is leveraged for preparing a target genome and annotation set for fusion transcript identification, fusion feature annotation, and integrates utilities for filtering likely false-positive fusions. - https://github.com/FusionFilter/FusionFilter/wiki

package fusion-filter

(downloads) docker_fusion-filter

Versions

0.5.0-1, 0.5.0-0

Depends blast

>=2.7.1

Depends gmap

>=2017.10.30

Depends perl

5.22.0*

Depends perl-carp

Depends perl-db-file

Depends perl-json-xs

Depends perl-perlio-gzip

Depends perl-set-intervaltree

Depends perl-uri

Depends python

2.7*

Depends samtools

Depends star

>=2.5.4a

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fusion-filter

and update with:

conda update fusion-filter

or use the docker container:

docker pull quay.io/biocontainers/fusion-filter:<tag>

(see fusion-filter/tags for valid values for <tag>)