recipe fusion-inspector

FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki

Homepage

https://github.com/FusionInspector/FusionInspector

License

BSD-3-Clause

Recipe

/fusion-inspector/meta.yaml

package fusion-inspector

(downloads) docker_fusion-inspector

Versions

1.3.1-1, 1.3.1-0, 1.2.0-0, 1.1.0-2, 1.1.0-1, 1.1.0-0

Depends bzip2

>=1.0.6,<2.0a0

Depends gmap

>=2017.11.15

Depends htslib

>=1.9,<1.10.0a0

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-db-file

Depends perl-set-intervaltree

Depends perl-uri

Depends python

>=2.7,<2.8.0a0

Depends requests

>=2.19.1

Depends samtools

>=1.3

Depends star

>=2.6.1b

Depends trinity

>=2.4

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fusion-inspector

and update with:

conda update fusion-inspector

or use the docker container:

docker pull quay.io/biocontainers/fusion-inspector:<tag>

(see fusion-inspector/tags for valid values for <tag>)