Package Recipe 'fusion-inspector'

recipe fusion-inspector

FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki

Homepage:: https://github.com/FusionInspector/FusionInspector
License:: BSD-3-Clause
Recipe:: /fusion-inspector/meta.yaml

package fusion-inspector¶

Versions:

2.2.1-0, 1.3.1-1, 1.3.1-0, 1.2.0-0, 1.1.0-2, 1.1.0-1, 1.1.0-0

Depends:

bzip2 >=1.0.8,<2.0a0
gmap >=2017.11.15
htslib >=1.9,<1.10.0a0
perl >=5.26.2,<5.26.3.0a0
perl-db-file
perl-set-intervaltree
perl-uri
python >=3
requests >=2.19.1
samtools >=1.3
star >=2.6.1b
trinity >=2.4

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fusion-inspector

and update with:

conda update fusion-inspector

or use the docker container:

docker pull quay.io/biocontainers/fusion-inspector:<tag>

(see fusion-inspector/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fusion-inspector/README.html)