recipe fusion-inspector

FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki

Homepage

https://github.com/FusionInspector/FusionInspector

License

BSD-3-Clause

Recipe

/fusion-inspector/meta.yaml

package fusion-inspector

Versions

2.2.1-0, 1.3.1-1, 1.3.1-0, 1.2.0-0, 1.1.0-2, 1.1.0-1, 1.1.0-0

Depends

• bzip2 >=1.0.8,<2.0a0

• gmap >=2017.11.15

• htslib >=1.9,<1.10.0a0

• perl >=5.26.2,<5.26.3.0a0

• perl-db-file

• perl-set-intervaltree

• perl-uri

• python >=3

• requests >=2.19.1

• samtools >=1.3

• star >=2.6.1b

• trinity >=2.4

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fusion-inspector

and update with:

conda update fusion-inspector

or use the docker container:

docker pull quay.io/biocontainers/fusion-inspector:<tag>

(see fusion-inspector/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fusion-inspector/README.html)