recipe fusion-report

Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline

Homepage:

https://github.com/matq007/fusion-report

License:

GPL3 / GPL-3.0-only

Recipe:

/fusion-report/meta.yaml

Links:

DOI: 10.5281/zenodo.2609024

package fusion-report

versions:

2.1.5-0,  2.1.4-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.2-0,  2.0.1-0,  2.0-0, 

2.1.5-0,  2.1.4-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.2-0,  2.0.1-0,  2.0-0,  1.0.0-2,  1.0.0-1

depends colorlog:

4.0.2

depends jinja2:

2.10.1

depends markupsafe:

<2.1

depends pandas:

depends python:

>=3.6

depends python-rapidjson:

depends pyyaml:

>=4.2b1

depends tqdm:

4.33.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fusion-report

and update with::

   mamba update fusion-report

To create a new environment, run:

mamba create --name myenvname fusion-report

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fusion-report:<tag>

(see `fusion-report/tags`_ for valid values for ``<tag>``)

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