recipe gangstr

GangSTR is a tool for genome-wide profiling tandem repeats from short reads.

Homepage

https://github.com/gymreklab/GangSTR

License

GPL-3.0-or-later

Recipe

/gangstr/meta.yaml

Links

doi: 10.1093/nar/gkz501

package gangstr

Versions

2.5.0-1,  2.5.0-0

Depends

• gsl >=2.6,<2.7.0a0

• htslib >=1.12,<1.13.0a0

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• nlopt >=2.7.0,<2.7.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gangstr

and update with:

conda update gangstr

or use the docker container:

docker pull quay.io/biocontainers/gangstr:<tag>

(see gangstr/tags for valid values for <tag>)

Download stats

Link to this page

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