recipe gangstr

GangSTR is a tool for genome-wide profiling tandem repeats from short reads.

Homepage:

https://github.com/gymreklab/GangSTR

License:

GPL-3.0-or-later

Recipe:

/gangstr/meta.yaml

Links:

doi: 10.1093/nar/gkz501

package gangstr

Versions:

2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0

Depends:

• gsl >=2.7,<2.8.0a0

• htslib >=1.14,<1.15.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• nlopt >=2.7.1,<2.7.2.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gangstr

and update with:

conda update gangstr

or use the docker container:

docker pull quay.io/biocontainers/gangstr:<tag>

(see gangstr/tags for valid values for <tag>)

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