recipe gap2seq

Gap2Seq is a tool for filling gaps between contigs in genome assemblies.

Homepage:

https://www.cs.helsinki.fi/u/lmsalmel/Gap2Seq/

License:

GPLv3

Recipe:

/gap2seq/meta.yaml

package gap2seq

Versions:

3.1-2,  3.1-1,  3.1-0,  2.1-4,  2.1-3,  2.1-2,  2.1-1,  2.1-0,  2.0-8, 

3.1-2,  3.1-1,  3.1-0,  2.1-4,  2.1-3,  2.1-2,  2.1-1,  2.1-0,  2.0-8,  2.0-7,  2.0-6,  2.0-5,  2.0-4,  2.0-1

Depends:

• htslib >=1.10.2,<1.11.0a0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• zlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gap2seq

and update with:

conda update gap2seq

or use the docker container:

docker pull quay.io/biocontainers/gap2seq:<tag>

(see gap2seq/tags for valid values for <tag>)

Notes

Gap2Seq is only tested on Linux x86_64 by its author.

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