recipe garnet

GarNet uses gene expression and epigenetic data to impute transcription factors (TFs) that played an important role in a biological system.

Homepage

https://github.com/fraenkel-lab/GarNet

License

MIT / MIT

Recipe

/garnet/meta.yaml

package garnet

Versions

0.4.5-0,  0.4.3-0,  0.4.0-0,  0.2.20-0,  0.2.17-0

Depends

• intervaltree

• jinja2

• libgcc

• matplotlib

• numpy

• pandas

• python 3.5*

• statsmodels

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install garnet

and update with:

conda update garnet

or use the docker container:

docker pull quay.io/biocontainers/garnet:<tag>

(see garnet/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/garnet/README.html)