gatk-framework

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The core MIT-licensed Genome Analysis Toolkit (GATK) framework, free for all uses

Home https://github.com/chapmanb/gatk
Versions 3.4.46, 3.5.21, 3.6.24
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/gatk-framework

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gatk-framework

and update with:

conda update gatk-framework

docker

A Docker container is available at https://quay.io/repository/biocontainers/gatk-framework.