recipe gatk-framework

The core MIT-licensed Genome Analysis Toolkit (GATK) framework, free for all uses

Homepage

https://github.com/chapmanb/gatk

License

MIT

Recipe

/gatk-framework/meta.yaml

package gatk-framework

(downloads) docker_gatk-framework

Versions
3.6.24-5,  3.6.24-4,  3.6.24-3,  3.6.24-2,  3.6.24-1,  3.6.24-0,  3.5.21-0,  3.4.46-3,  3.4.46-2, 

3.6.24-5,  3.6.24-4,  3.6.24-3,  3.6.24-2,  3.6.24-1,  3.6.24-0,  3.5.21-0,  3.4.46-3,  3.4.46-2,  3.4.46-1,  3.4.46-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gatk-framework

and update with:

conda update gatk-framework

or use the docker container:

docker pull quay.io/biocontainers/gatk-framework:<tag>

(see gatk-framework/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gatk-framework/README.html)