recipe gatk

The full Genome Analysis Toolkit (GATK) framework, v3

Homepage

https://www.broadinstitute.org/gatk/

License

BSD

Recipe

/gatk/meta.yaml

Links

biotools: gatk

package gatk

(downloads) docker_gatk

Versions
3.8-103.8-93.8-83.8-73.8-53.8-43.8-33.8-23.8-1

3.8-103.8-93.8-83.8-73.8-53.8-43.8-33.8-23.8-13.8-03.7-13.7-03.6-103.6-93.6-83.6-73.6-63.6-53.6-43.6-33.6-23.6-13.5-103.5-63.5-5

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gatk

and update with:

conda update gatk

or use the docker container:

docker pull quay.io/biocontainers/gatk:<tag>

(see gatk/tags for valid values for <tag>)