recipe gatk

The full Genome Analysis Toolkit (GATK) framework, v3

Homepage:

https://www.broadinstitute.org/gatk/

License:

BSD

Recipe:

/gatk/meta.yaml

Links:

biotools: gatk

package gatk

Versions:

3.8-11,  3.8-10,  3.8-9,  3.8-8,  3.8-7,  3.8-5,  3.8-4,  3.8-3,  3.8-2, 

3.8-11,  3.8-10,  3.8-9,  3.8-8,  3.8-7,  3.8-5,  3.8-4,  3.8-3,  3.8-2,  3.8-1,  3.8-0,  3.7-1,  3.7-0,  3.6-11,  3.6-10,  3.6-9,  3.6-8,  3.6-7,  3.6-6,  3.6-5,  3.6-4,  3.6-3,  3.6-2,  3.6-1,  3.5-11,  3.5-10,  3.5-6,  3.5-5

Depends:

• openjdk >=8,<9

• python

• r-ggplot2

• r-gplots

• r-gsalib

• r-reshape

Required By:

• lrtk

• phenix

• mtbseq

• etoki

• panpasco

• uvp

• haphpipe

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gatk

and update with:

conda update gatk

or use the docker container:

docker pull quay.io/biocontainers/gatk:<tag>

(see gatk/tags for valid values for <tag>)

Download stats

Link to this page

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