recipe gcluster

Gcluster is a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes.

Homepage:

https://www.microbialgenomic.cn/Gcluster_tool.html

Documentation:

https://github.com/Xiangyang1984/Gcluster

License:

GNU General Public License v3.0 or any later version (GPL-3.0-or-later)

Recipe:

/gcluster/meta.yaml

Gcluster is a stand-alone Perl application, which requires MCL, NCBI BLAST+ and several Perl Modules (GD, GD::SVG) to be installed before use.

package gcluster

(downloads) docker_gcluster

versions:
2.06-2,  2.06-0,  2.0.7-0,  2.0.5-1,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-1, 

2.06-2,  2.06-0,  2.0.7-0,  2.0.5-1,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-1,  2.0.1-0

depends blast:

depends mcl:

depends perl-bioperl-core:

depends perl-gd:

depends perl-gd-svg:

depends perl-svg:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gcluster

and update with::

   mamba update gcluster

To create a new environment, run:

mamba create --name myenvname gcluster

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gcluster:<tag>

(see `gcluster/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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