recipe gdc

Utility designed for compression of genome collections from the same species.

Homepage:

http://sun.aei.polsl.pl/REFRESH/index.php?page=projects&project=gdc&subpage=about

License:

GPL2

Recipe:

/gdc/meta.yaml

Links:

biotools: GDC, doi: 10.1038/srep11565

package gdc

(downloads) docker_gdc

versions:

2.0-5,  2.0-4,  2.0-3,  2.0-2,  2.0-1,  2.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gdc

and update with::

   mamba update gdc

To create a new environment, run:

mamba create --name myenvname gdc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gdc:<tag>

(see `gdc/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gdc/README.html)