recipe gemini

a lightweight db framework for disease and population genetics.

Homepage

https://github.com/arq5x/gemini

License

MIT License

Recipe

/gemini/meta.yaml

Links

biotools: GEMINI, doi: 10.1371/journal.pcbi.1003153

package gemini

Versions

0.30.2-0, 0.30.1-0, 0.20.1-2, 0.20.1-1, 0.20.1-0, 0.20.0-0, 0.20.0a0-0, 0.19.2a-2, 0.19.2a-1, 0.19.2a-0, 0.19.1-3, 0.19.1-2, 0.19.1-1, 0.19.1-0, 0.19.0-0, 0.18.3-1, 0.18.2-1, 0.18.1-3, 0.18.1-2, 0.18.1-1, 0.18.0-8, 0.18.0-7, 0.18.0-6, 0.18.0-5, 0.18.0-4, 0.18a-4, 0.17.3dev1-4, 0.17.3dev1-3, 0.17.3dev0-2, 0.17.3dev0-1

Depends

• bcolz

• bottle

• bx-python

• cyordereddict

• cython

• cyvcf2 >0.6.5

• geneimpacts

• grabix

• inheritance

• ipyparallel

• ipython-cluster-helper

• jinja2

• networkx

• numexpr

• numpy

• openpyxl

• pandas

• pybedtools

• pysam

• python >=2.7,<2.8.0a0

• python-snappy

• pyyaml

• scipy

• snappy >=1.1.7,<1.1.8.0a0

• sqlalchemy

• unidecode

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gemini

and update with:

conda update gemini

or use the docker container:

docker pull quay.io/biocontainers/gemini:<tag>

(see gemini/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gemini/README.html)