recipe gemini

a lightweight db framework for disease and population genetics.

Homepage:

https://github.com/arq5x/gemini

License:

MIT License

Recipe:

/gemini/meta.yaml

Links:

biotools: GEMINI, doi: 10.1371/journal.pcbi.1003153

package gemini

Versions:

0.30.2-5,  0.30.2-4,  0.30.2-3,  0.30.2-2,  0.30.2-1,  0.30.2-0,  0.30.1-0,  0.20.1-7,  0.20.1-6, 

0.30.2-5,  0.30.2-4,  0.30.2-3,  0.30.2-2,  0.30.2-1,  0.30.2-0,  0.30.1-0,  0.20.1-7,  0.20.1-6,  0.20.1-5,  0.20.1-4,  0.20.1-3,  0.20.1-2,  0.20.1-1,  0.20.1-0,  0.20.0-0,  0.20.0a0-0,  0.19.2a-2,  0.19.2a-1,  0.19.2a-0,  0.19.1-3,  0.19.1-2,  0.19.1-1,  0.19.1-0,  0.19.0-0,  0.18.3-1,  0.18.2-1,  0.18.1-3,  0.18.1-2,  0.18.1-1,  0.18.0-8,  0.18.0-7,  0.18.0-6,  0.18.0-5,  0.18.0-4,  0.18a-4,  0.17.3dev1-4,  0.17.3dev1-3,  0.17.3dev0-2,  0.17.3dev0-1

Depends:

• bcolz

• bottle

• bx-python

• cyordereddict

• cyvcf2 >0.6.5

• geneimpacts

• grabix

• inheritance

• ipyparallel

• ipython-cluster-helper

• jinja2

• libgcc-ng >=10.3.0

• networkx

• numexpr

• numpy

• openpyxl

• pandas

• pybedtools

• pysam

• python >=2.7,<2.8.0a0

• python-snappy

• python_abi 2.7.* *_cp27mu

• pyyaml

• scipy

• snappy >=1.1.8,<2.0a0

• sqlalchemy

• unidecode

• wget

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gemini

and update with:

conda update gemini

or use the docker container:

docker pull quay.io/biocontainers/gemini:<tag>

(see gemini/tags for valid values for <tag>)

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