recipe gemini

a lightweight db framework for disease and population genetics.

Homepage

https://github.com/arq5x/gemini

License

MIT License

Recipe

/gemini/meta.yaml

Links

biotools: GEMINI, doi: 10.1371/journal.pcbi.1003153

package gemini

(downloads) docker_gemini

Versions

0.30.1-0, 0.20.1-1, 0.20.1-0, 0.20.0-0, 0.20.0a0-0, 0.19.2a-2, 0.19.2a-1, 0.19.2a-0, 0.19.1-3, 0.19.1-2, 0.19.1-1, 0.19.1-0, 0.19.0-0, 0.18.3-1, 0.18.2-1, 0.18.1-3, 0.18.1-2, 0.18.1-1, 0.18.0-8, 0.18.0-7, 0.18.0-6, 0.18.0-5, 0.18.0-4, 0.18a-4, 0.17.3dev1-4, 0.17.3dev1-3, 0.17.3dev0-2, 0.17.3dev0-1

Depends bcolz

Depends bottle

Depends bx-python

Depends cyordereddict

Depends cython

Depends cyvcf2

>0.6.5

Depends geneimpacts

Depends grabix

Depends inheritance

Depends ipyparallel

Depends ipython-cluster-helper

Depends jinja2

Depends networkx

Depends numexpr

Depends numpy

Depends openpyxl

Depends pandas

Depends pybedtools

Depends pysam

Depends python

>=2.7,<2.8.0a0

Depends python-snappy

Depends pyyaml

Depends scipy

Depends snappy

>=1.1.7,<1.1.8.0a0

Depends sqlalchemy

Depends unidecode

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gemini

and update with:

conda update gemini

or use the docker container:

docker pull quay.io/biocontainers/gemini:<tag>

(see gemini/tags for valid values for <tag>)