- recipe gemoma
Gene Model Mapper (GeMoMa) is a homology-based gene prediction program. GeMoMa uses the annotation of protein-coding genes in a reference genome to infer the annotation of protein-coding genes in a target genome. Thereby, GeMoMa utilizes amino acid sequence and intron position conservation. In addition, GeMoMa allows to incorporate RNA-seq evidence for splice site prediction.
- Homepage
- License
GPL3
- Recipe
- Links
doi: 10.1093/nar/gkw092, doi: 10.1186/s12859-018-2203-5
- package gemoma¶
-
- Versions
1.7.1-0
,1.6.4-1
,1.6.4-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install gemoma
and update with:
conda update gemoma
or use the docker container:
docker pull quay.io/biocontainers/gemoma:<tag>
(see gemoma/tags for valid values for
<tag>
)
Notes¶
GeMoMa is Java program that comes with a custom wrapper python script. By default "-Xms1g -Xmx2g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence.
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Link to this page¶
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