recipe gencube

GenCube enables researchers to search for, download, retrieve metadata, and unify genome assemblies and diverse types of annotations for sequencing-based experimental data.

Homepage:

https://github.com/snu-cdrc/gencube

License:

MIT / MIT

Recipe:

/gencube/meta.yaml

package gencube

versions:

1.1.0-0

depends beautifulsoup4:

>=4.9.3

depends biopython:

>=1.79

depends numpy:

>=1.21.0,<2

depends pandas:

>=1.0.0

depends python:

depends requests:

>=2.25.1

depends tabulate:

>=0.8.9

depends tqdm:

>=4.61.2

depends urllib3:

>=1.26.5

depends xmltodict:

>=0.12.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gencube

and update with::

   mamba update gencube

To create a new environment, run:

mamba create --name myenvname gencube

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gencube:<tag>

(see `gencube/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gencube/README.html)