recipe gene-fetch

High-throughput NCBI Sequence Retrieval Tool

Homepage:

https://github.com/bge-barcoding/gene_fetch

License:

MIT / MIT

Recipe:

/gene-fetch/meta.yaml

Gene Fetch is a tool designed for high-throughput retrieval of sequences from NCBI databases. It enables researchers to efficiently obtain genomic sequences based on taxonomic and genomic criteria.

package gene-fetch

versions:

1.0.11-0,  1.0.9-0

depends biopython:

>=1.80

depends python:

>=3.9

depends ratelimit:

>=2.2.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gene-fetch

and update with::

   mamba update gene-fetch

To create a new environment, run:

mamba create --name myenvname gene-fetch

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gene-fetch:<tag>

(see `gene-fetch/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gene-fetch/README.html)