recipe generax

GeneRax: a parallel tool for species tree-aware maximum likelihood based gene tree inference under gene duplication, transfer, and loss.

Homepage:

https://github.com/benoitmorel/generax

License:

AGPL / AGPL-3

Recipe:

/generax/meta.yaml

Links:

doi: 10.1101/779066

package generax

versions:

2.1.3-0,  2.0.4-3,  2.0.4-2,  2.0.4-1,  2.0.4-0,  2.0.2-0,  2.0.1-0,  1.2.3-0,  1.2.2-0, 

2.1.3-0,  2.0.4-3,  2.0.4-2,  2.0.4-1,  2.0.4-0,  2.0.2-0,  2.0.1-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.0-0,  1.0.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends openmpi:

>=4.1.6,<5.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install generax

and update with::

   mamba update generax

To create a new environment, run:

mamba create --name myenvname generax

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/generax:<tag>

(see `generax/tags`_ for valid values for ``<tag>``)

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