recipe genomedata

tools for accessing large amounts of genomic data

Homepage

http://genomedata.hoffmanlab.org/

License

GPL2

Recipe

/genomedata/meta.yaml

Links

biotools: genomedata, doi: 10.1093/bioinformatics/btq164

package genomedata

Versions

1.4.4-6,  1.4.4-5,  1.4.4-4,  1.4.4-3,  1.4.4-1,  1.4.4-0,  1.4.1-3,  1.4.1-2,  1.4.1-0, 

1.4.4-6,  1.4.4-5,  1.4.4-4,  1.4.4-3,  1.4.4-1,  1.4.4-0,  1.4.1-3,  1.4.1-2,  1.4.1-0,  1.4.0-1,  1.4.0-0,  1.3.6-0,  1.3.5-0

Depends

• bedtools

• hdf5 >=1.10.5,<1.10.6.0a0

• libgcc-ng >=7.5.0

• path.py

• pytables >=3.4.3

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• six

• textinput

• ucsc-bigwigtobedgraph

• zlib >=1.2.11,<1.3.0a0

Required By

• segway

• segtools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install genomedata

and update with:

conda update genomedata

or use the docker container:

docker pull quay.io/biocontainers/genomedata:<tag>

(see genomedata/tags for valid values for <tag>)

Link to this page

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