recipe genomedata

tools for accessing large amounts of genomic data

Homepage:

http://genomedata.hoffmanlab.org/

License:

GPL2

Recipe:

/genomedata/meta.yaml

Links:

biotools: genomedata, doi: 10.1093/bioinformatics/btq164

package genomedata

Versions:

1.6.0-0,  1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.4.4-6,  1.4.4-5,  1.4.4-4,  1.4.4-3, 

1.6.0-0,  1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.4.4-6,  1.4.4-5,  1.4.4-4,  1.4.4-3,  1.4.4-1,  1.4.4-0,  1.4.1-3,  1.4.1-2,  1.4.1-0,  1.4.0-1,  1.4.0-0,  1.3.6-0,  1.3.5-0

Depends:

• bedtools

• hdf5 >=1.12.1,<1.12.2.0a0

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• path.py

• pytables >=3.4.3

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• setuptools

• six

• textinput

• ucsc-bigwigtobedgraph >=377

Required By:

• segway

• segtools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install genomedata

and update with:

conda update genomedata

or use the docker container:

docker pull quay.io/biocontainers/genomedata:<tag>

(see genomedata/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genomedata/README.html)