recipe genomelake

Simple and efficient random access to genomic data for deep learning models.

Homepage

https://github.com/kundajelab/genomelake

License

BSD / BSD License

Recipe

/genomelake/meta.yaml

Simple and efficient random access to genomic data for deep learning models.

package genomelake

Versions

0.1.4-3, 0.1.4-2, 0.1.4-1, 0.1.4-0

Depends

• bcolz >=1.1

• libgcc-ng >=7.3.0

• numpy

• pybedtools

• pybigwig

• pysam

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• six >=1.9.0

Required By

• kipoiseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install genomelake

and update with:

conda update genomelake

or use the docker container:

docker pull quay.io/biocontainers/genomelake:<tag>

(see genomelake/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genomelake/README.html)