recipe genomextract

GenomeXtract - A toolkit to easily find, compare, and assemble NCBI genomes.

Homepage:

https://github.com/KK260/GenomeXtract

License:

GPL-3.0-only

Recipe:

/genomextract/meta.yaml

package genomextract

versions:

0.1.5-0,  0.1.2-0

depends astral-tree:

5.7.8

depends biopython:

depends iqtree:

3.0.1

depends mafft:

7.525

depends ncbi-datasets-cli:

18.9.0

depends openpyxl:

depends pandas:

depends python:

>=3.6

depends raxml-ng:

1.2.2

depends requests:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genomextract

and update with::

   mamba update genomextract

To create a new environment, run:

mamba create --name myenvname genomextract

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genomextract:<tag>

(see `genomextract/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genomextract/README.html)