recipe genotyphi

Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)

Homepage

https://github.com/katholt/genotyphi

License

GPL3

Recipe

/genotyphi/meta.yaml

package genotyphi

(downloads) docker_genotyphi

Versions

1.9.1-01.9.0-01.8.0-01.7.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install genotyphi

and update with:

conda update genotyphi

or use the docker container:

docker pull quay.io/biocontainers/genotyphi:<tag>

(see genotyphi/tags for valid values for <tag>)

Download stats