recipe getorganelle

Get organelle genomes from genome skimming data

Homepage:

http://github.com/Kinggerm/GetOrganelle

License:

GPL3

Recipe:

/getorganelle/meta.yaml

package getorganelle

Versions:

1.7.7.0-0,  1.7.6.1-0,  1.7.5.3-0,  1.7.5.0-1,  1.7.5.0-0,  1.7.4.1-0,  1.7.4-0,  1.7.3.5-0,  1.7.3.4-0, 

1.7.7.0-0,  1.7.6.1-0,  1.7.5.3-0,  1.7.5.0-1,  1.7.5.0-0,  1.7.4.1-0,  1.7.4-0,  1.7.3.5-0,  1.7.3.4-0,  1.7.3.2-0,  1.7.3.1-0,  1.7.3-0,  1.7.2-0,  1.7.1-0,  1.7.0-1,  1.7.0-0,  1.6.4-1,  1.6.4-0

Depends:

• blast >=2.3

• bowtie2 >=2.3

• numpy >=1.16.4

• perl

• pigz

• python

• requests

• scipy >=1.3.0

• spades >=3.9

• sympy >=1.4

• tbb <=2020.2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install getorganelle

and update with:

conda update getorganelle

or use the docker container:

docker pull quay.io/biocontainers/getorganelle:<tag>

(see getorganelle/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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